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SMALL BUSINESS PAYROLL SOFTWARE

Turn Timecards Into Paychecks in Just a Few Clicks!

Small business payroll software with time tracking built in. Run payroll in 2 minutes or less, and let OnTheClock handle taxes, direct deposits, and W-2s.

Enrollment in OnTheClock Payroll is simple and easy.
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More Than 18,000 Companies Trust OnTheClock

Efficiently manage your workforce from a single platform

Time tracking and payroll in one system. OnTheClock Payroll turns employee hours into paychecks, direct deposits, and filed taxes with no exporting, spreadsheet formatting, or re-keying.

As small business payroll software, it's built to eliminate double data entry, delays, and payroll mistakes that come from using separate time tracking and payroll tools. No spreadsheets, re-keying employee hours, or waiting on a third-party payroll provider to catch up. One app. One login. One time clock and payroll workflow.

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Time and Attendance Software With Payroll Built In

When your employees clock in through OnTheClock, their hours flow straight into payroll without anyone re-typing a thing. As time clock and payroll software designed to work together, OnTheClock eliminates the frustrating manual export-import step most payroll providers require.

  • Sync employee hours, breaks, and overtime from timecards to payroll automatically.
  • Approve timecards once, then let payroll calculate from there.
  • Skip third-party exports, manual entry, and totals that do not match.

This is what payroll and time tracking software should have looked like from the start: One easy-to-use system instead of two tools awkwardly talking to each other. OnTheClock remains a reliable time clock for payroll, no matter where or how your team works. 

Straightforward Pricing, No Hidden Fees

Between correcting mistakes, calculating overtime, tracking employee hours, and filing payroll taxes, paying employees can quickly become one of the most time-consuming administrative tasks in your business.

OnTheClock Payroll costs $40 per month plus $6 per worker, whether that worker is a W-2 employee or a 1099 contractor. Unlimited pay runs and multi-state payroll are always included at no extra cost. Our team of experts will even import your historical payroll data, connecting your bank account, and auditing everything for accuracy to ensure you are set up for success..

  • Billed month to month, with no long-term contract.
  • No upcharges for W-2s, 1099s, direct deposit, off-cycle pay runs, or support.
  • Year-end forms included for both employees and contractors.
  • Benefits, garnishments, and pre-tax and post-tax deductions processed at no extra charge.
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Let Us File Your Payroll Taxes for You!

Payroll taxes are calculated, filed, and paid automatically, on time, every time.

  • OnTheClock calculates and files federal, state, and local payroll taxes, so you never miss a deadline.
  • W-2s for employees and 1099s for contractors are generated at no additional cost.
  • Quarterly filings, including Forms 940 and 941, are included with every payroll run.
  • Employee withholdings come out of gross pay automatically, and rates update when tax rules change.

Unlike traditional online payroll software that requires multiple tools and manual data entry, OnTheClock Payroll handles payroll taxes from the same platform your hourly employees use to track their time.

OnTheClock Payroll is powered by Check, a payroll infrastructure provider trusted by more than 15,000 employers. Check has processed over 300,000 payrolls and moved more than $4 billion in payroll funds, and its compliance team tracks changes to labor laws and tax codes so you do not have to.

 

Payroll for Hourly Employees, Salaried Staff and 1099 Contractors

Whether your team is only employees, only contractors, or a mix of both, OnTheClock Payroll makes payroll for hourly employees and salaried staff simple by running everything through a single platform.

 

  • Track contractor hours side-by-side with employees, or skip time tracking for flat-rate contractors.
  • Pay W-2 employees and 1099 contractors through direct deposit or printed checks with no hidden fees.
  • Give employees access to pay stubs, W-2s, and withholding updates through our employee self-service portal without adding more work to your plate.

Payroll for small business teams often means juggling two logins, two support lines, and two sets of totals that don't always match. OnTheClock Payroll cuts that down to one, so nothing falls through the cracks and errors are eliminated.

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Customizable Payroll Reports

Every payroll run produces reports you can shape to fit your business.

  • Salaries, taxes, benefits, and deductions on a single document.
  • Any timeframe you need: weekly, biweekly, monthly, quarterly, or annual.
  • Unlimited reports at no extra cost.
  • Metrics worth watching, including average wage per employee, overtime costs, and turnover.

Online Payroll Software You Can Count On

 
Running payroll is too important to leave to chance. From employee tax information and direct deposit details to year-end filings, accuracy matters every time you click "Run Payroll."

OnTheClock Payroll combines secure online payroll software with award-winning customer support, giving small businesses the confidence that payroll will be processed accurately and on time.

Our US-based expert payroll specialists are available by phone, chat, or email whenever you have a question, so you're never left guessing whether something went wrong.

How to Enroll in OnTheClock Payroll (in 15 Minutes or Less!)

1
Sign Up or Schedule Your Demo

Sign up directly inside your account or connect with a payroll expert to discuss your unique business needs and see OnTheClock in action.

2
Personalized Setup

Our dedicated team will guide you through setting up your account, ensuring everything is configured perfectly.

3
Data Migration Support

We'll help ensure a smooth and secure transfer of your existing payroll data, minimizing any disruption.

4
Go Live with Confidence

Start processing payroll with the peace of mind that comes from our ongoing expert support.

Complete Payroll Quickly, Easily, and Affordably

What Our Customers Are Saying

5-stars

"There is a huge difference in time it takes to run payroll now…the longest it takes is maybe 10 minutes and that's only if we have any bonuses to input.. Having the benefits broken down helps for our Simple IRA data entry saves me additional time."

Megan GlaspieOwner and Audiologist: Finger Lakes Hearing Center

Everything You Need In One Place

Small Business Payroll Frequently Asked Questions

How much does OnTheClock Payroll cost?

OnTheClock Payroll costs $40 per month plus $6 per worker, whether they're a W-2 employee or 1099 contractor. A one-time $250 migration fee covers importing your historical payroll data and auditing it for accuracy. No hidden fees, long-term contracts, or surprise payroll charges. 

How does OnTheClock Payroll Work?

OnTheClock Payroll automates the payroll process by importing employee hours tracked directly through OnTheClock’s time tracking system. Users can review, approve, and process payroll with just a few clicks, making it simple to manage payroll for your team.

How do I get started with OnTheClock Payroll?

To get started, sign up for an account on our website. Once you’ve set up an account and input your payment information, OnTheClock payroll may be accessed through the Payroll icon. For those new to the software, visit OnTheClock Payroll directly for more information at https://www.ontheclock.com/payroll.aspx. If you’re already utilizing a paid OnTheClock account, simply login to your account and click the payroll icon.

Can I use OnTheClock Payroll without the time clock?

No. OnTheClock Payroll is built on top of the OnTheClock time clock, so employee hours flow straight into payroll instead of being imported from somewhere else. That's what removes the double entry and mismatched totals most payroll providers leave you to sort out. If you're currently tracking hours in another system, moving that tracking into OnTheClock is part of setup. 

What makes OnTheClock a reliable choice for payroll?

OnTheClock Payroll was built through a partnership with Check, a payroll institution trusted by 15,000-plus employers and 180,000-plus employees nationwide. Check has processed more than 300,000 payrolls and securely moved $4 billion in payroll funds, ensuring the reliability and accuracy you’d expect from an industry leader. By partnering with Check, OnTheClock Payroll is built on years of refined expertise, minimizing risk for your business.

How does OnTheClock handle compliance and regulatory changes?

OnTheClock Payroll was built through a partnership with Check. Check’s dedicated compliance team monitors real-time updates to labor laws, tax codes, and reporting requirements. This expertise is embedded into OnTheClock’s platform, automating withholdings, filings, and audits. Check has processed more than 300,000 payrolls and helped resolve complex compliance challenges for businesses across industries. This ensures you, as an OnTheClock user, remain ahead of any and all regulatory shifts.

How can OnTheClock Payroll help my company save money?

With OnTheClock Payroll, businesses avoid the fees associated with hiring external payroll providers, which can result in significant time and cost savings, especially for small to mid-sized businesses. 

Will OnTheClock’s award-winning support team be available to assist with payroll concerns?

Yes. OnTheClock’s support team will be available to help customers with any questions or concerns they may have. 

Is employee data secure with OnTheClock Payroll?

Absolutely. OnTheClock takes data security seriously and implements robust security measures to protect all employees’ personal information and payroll data, including encryption and secure access protocols.

Is there a cost for account setup and migrating pay history from previous payroll solutions?

We will handle your whole payroll migration. Our expert team makes this process a breeze! We do require a one-time fee for setup and migration of $250. Our team will transfer over all payroll history, including past tax information and employees.

How do deductions, like retirement, insurance, etc., work?

Both pre- and post-tax benefits are supported. These include medical, vision, dental, and disability insurance payments as well as various retirement funds, including 401(k), 403(b), Roth 401(k), etc. The program also supports flexible spending accounts (FSAs) and health savings accounts (HSAs) for both medical and dependent care.

Does OnTheClock Payroll calculate taxes?

Yes. The program will automatically set up and calculate local, state, and federal withholdings. If and when tax changes occur, the software will automatically update accordingly.

Is it difficult to switch from my current provider?

No. OnTheClock Payroll’s migration service will import all the necessary information. Following the migration process, employees will need to customize their deductions and payment preferences, but, outside of that, switching to OnTheClock Payroll is fairly seamless.

How long does payroll take to complete?

A typical payroll process takes four business days to complete. Accelerated approval (two days) and next-day direct deposit will not be available upon launch.

How can I add Payroll to my plan?

Adding payroll is easy! Simply log in as an OnTheClock Admin, click on the "Payroll" icon at the top of the page, and then click the "Enroll" button. OnTheClock will walk you through the steps to get your team set up.

How can OnTheClock payroll enhance confidentiality?

Managing payroll internally reduces the number of parties who have access to sensitive employee information, decreasing the risk of data breaches.

Can OnTheClock payroll facilitate better communication?

Internal payroll enables direct communication between the payroll team and other departments, ensuring timely and accurate updates to employees' statuses, benefits, or deductions.

Does OnTheClock payroll offer organizations more flexibility?

When payroll is managed in-house, managers can make corrections and alterations quickly and easily. This flexibility ensures that payroll can be adapted rapidly to any and all changing business needs.

Can OnTheClock Payroll be customized?

Yes. OnTheClock payroll can be extensively customized to meet each business's specific needs, covering reporting requirements, deduction types, tailored benefits, and more.

Can I pay both employees and contractors with OnTheClock Payroll?

Yes! OnTheClock makes it simple to run payroll for both W-2 employees and 1099 contractors in one platform. You can track time for each, pay them via direct deposit, and auto-generate their year-end forms (W-2s and 1099s) without extra fees.

Do contractors need to track time in OnTheClock?

It’s up to you. If you pay contractors hourly, you can track their time just like employees. If you pay them per project or flat rate, you can skip time tracking and simply run payroll.

Are 1099s included in the monthly price?

Absolutely. There are no hidden fees. Your monthly base fee and per-worker fee cover both W-2 employees and 1099 contractors, including year-end form generation.

How does OnTheClock Payroll handle W-2 employees vs. 1099 contractors?

 Whether you have employees, contractors, or a mix of both, OnTheClock Payroll keeps everything in one place. 

W-2 Employees

  • Automatic tax withholding
  • Year-end W-2 forms auto-generated
  • PTO tracking and scheduling included
  • Benefits, garnishments, and deductions processed automatically
  • Paid via direct deposit

1099 Contractors

  • No tax withholding (contractors handle their own)
  • Year-end 1099 forms auto-generated
  • Optional time tracking built in
  • Simple, accurate payments with no hidden fees
  • Paid via direct deposit

Is small business payroll software affordable?

Yes. Small business payroll software is often more affordable than business owners expect. When you factor in the time saved, payroll tax filings, direct deposits, year-end tax forms, and reduced payroll errors, many businesses find payroll software pays for itself. 

How do I switch payroll providers without disrupting my team?

OnTheClock's migration team handles the transfer of your historical employee, company, and payroll data for you. Our implementation specialists work with you throughout the transition to help ensure payroll continues running smoothly. 

What's the best time to switch payroll providers?

The end of a calendar year or the beginning of a new quarter is usually the easiest time to switch payroll providers, since it helps avoid splitting historical payroll data across multiple systems. However, businesses can switch payroll providers at any time of the year with the proper migration support. 

Does OnTheClock Payroll handle payroll tax compliance?

Yes. OnTheClock Payroll automatically calculates and files federal, state, and local payroll taxes. Quarterly filings, W-2s, and 1099s are included, helping small businesses stay compliant without the administrative burden. 

How long does payroll take to process?

Most businesses can run payroll in just a few clicks once employee hours have been approved. Because employee time tracking and payroll live in the same platform, there's no need to re-enter hours or manually import time sheets. 

Can I pay hourly employees and contractors through OnTheClock Payroll?

Yes. OnTheClock Payroll supports payroll for hourly employees, salaried employees, and 1099 contractors from one platform. Whether you're paying employees by direct deposit or managing contractor payments, everything is handled in one place. 

What does small business payroll software include?

OnTheClock Payroll includes payroll tax filings, direct deposit, employee self-service tools, W-2s, 1099s, payroll reporting, and integrated employee time tracking. It's designed to simplify payroll for small businesses by bringing time tracking and payroll together into a single platform. 

Does OnTheClock Payroll support my state?

OnTheClock Payroll supports payroll tax filings in all 50 U.S. states. Contact our team to confirm availability and learn more about state-specific payroll requirements for your business. 

What are the benefits of using payroll software for a small business?

Payroll software helps small businesses save time, reduce payroll errors, automate tax filings, and improve the employee experience. By automating repetitive tasks and keeping payroll and time tracking connected, business owners can spend less time processing payroll and more time growing their businesses. 

What should I look for in payroll management software?

The biggest factor for most small businesses is whether the payroll management software connects to how you already track employee hours. Software that requires exporting timecards from one system and importing them into another reintroduces the errors it was meant to prevent. It's also worth checking whether payroll tax filings, W-2s, and 1099s are included rather than billed separately, and whether support is reachable when something goes wrong mid-run. 

Take control of hours, costs, and schedules in minutes.